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徐云
单位:计算机科学与技术学院
地址:国家高性能计算中心(合肥)
邮编:230026
电话:+86-551-63602441
个人主页: http://staff.ustc.edu.cn/~xuyun/
实验室介绍:
 
个人简历 Personal resume
徐云,男,博士,中国科学技术大学计算机系教授。2002年中国科学技术大学计算机系博士毕业,获计算机软件与理论专业博士学位,现在国家高性能计算中心(合肥)从事研究工作。近几年主要研究多核并行理论和方法、并行应用系统开发、生物文献挖掘与生物信息学等。至今主持国家自然基金面上项目、国家重点自然基金子课题、973子课题、863子课题、中科院软件所开放基金项各1项,国家精品课程“并行计算”网络教学建设应用项目的主要参加人,并作为骨干参与了863、973、发改委、工信部等国家级课题及省部级科研项目10多项。在Bioinformatics、BMC Bioinformatics、计算机学报和软件学报等刊物和国际学术会议上发表学术论文50余篇。
 
研究方向 Research direction
1、大数据挖掘及生物信息学算法
2、并行分布式系统及性能优化
 
招生信息 Enrollment information
对多核并行、数据挖掘与生物信息学感兴趣,并有良好的英语基础。
 
论文专著 The monograph
1) MBA: A Literature Mining System for Extracting Biomedical Abbreviations - BMC Bioinformatics - 2009 - 10:14
2) Improved Voting Algorithms For Planted (l, d) Motif Search - Information Sciences - 2013 -
3) Integrated research of parallel computing: Status and Future - Chinese Sci Bull - 2009 - 54: 1845-1853
4) FNphasing: A novel fast heuristic algorithm for haplotype phasing based on flow network model - IEEE Trans. on Comput. Biology & Bioinfo - 2013 -
5) A Better Block Partition and Ligation Strategy for Individual Haplotyping - Bioinformatics - 2008 - 24(23): 2720-2725
6) MinePhos: a literature mining system for protein phoshphorylation - IEEE Trans. on Comput. Biology & Bioinfo - 2012 -
7) Core Management and Algorithms in all-to-all Multicast - Chinese Journal of Computer Research and Developme - 2008 - 45(6): 923-929
8) WinHAP: an Efficient haplotype phasing algorithm based on scalable sliding windows - PLOS One - 2012 -
9) PECB: Prediction of Enzyme Catalytic Residues Based on Naïve Bayes Classification - Int. J. of Bioinformatics Research and Application - 2008 - 4(3):295-305
10) A new progressive algorithm for multiple longest common subsequences problem and its efficient parallelization - IEEE Trans. on Para. and Distrib. Systems - 2012 -
11) Depth Mapping for Stereoscopic Videos - International Journal of Computer vision - 2012 -
12) Integrated Fiber-Wireless (FiWi) Access Networks Supporting Inter-ONU Communications - IEEE/OSA Journal of Lightwave Technology - 2010 -
13) MBA: A Literature Mining System for Extracting Biomedical Abbreviations - BMC Bioinformatics - 2009 -
14) A Better Block Partition and Ligation Strategy for Individual Haplotyping - Bioinformatics - 2008 -
15) Optimization of Triangular Matrix Functions in BLAS Library on Looson2F - International Conference on NPC 2010 - 2010 -
 
报考意向 Ambition
 
 
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