1) Boolean network-based analysis of the apoptosis network: Irreversible apoptosis and stable surviving - J Theore Biol - 2009 - 259
2) Fragment-based local statistical potentials derived by combining an alphabet of protein local structures with secondary structures and solvent accessibilities - proteins - 2009 - 74
3) Refining the Description of Peptide Backbone Conformations Improves Protein Simulations Using the GROMOS 53A6 Force Field - J Comput Chem - 2009 - 30
4) A Quantum Mechanical/Molecular Mechanical Study on the Catalysis of the Pyridoxal 5'-Phosphate-Dependent Enzyme L-Serine Dehydratase - J Phys Chem B - 2008 - 112
5) Hamiltonian replica exchange approach and its application to the study of side-chain type and neighbor effects on peptide backbone conformations - J Chem Theore Comput - 2008 - 112
6) Origins of the different metal preferences of Escherichia coli peptide deformylase and Bacillus thermoproteolyticus thermolysin: A comparative quantum mechanical/molecular mechanical study - J Phys Chem B - 2008 - 112
7) Using free energy perturbation to predict effects of changing force field parameters on computed conformational equilibriums of peptides - J chem phys - 2008 - 129
8) Molecular dynamics sinmlation with ACM - Biophys.J. - 200308 -